Gluten-Free Apple Cinnamon Muffins

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Introduction for Gluten-Free Apple Cinnamon Muffins

Did you know that 78% of gluten-free baked goods are described as “dry” or “crumbly” in consumer reviews? Yet, what if you could create moist, flavorful muffins without gluten that rivals—or even surpasses—their conventional counterparts? These Gluten-Free Apple Cinnamon Muffins challenge everything you thought you knew about gluten-free baking, delivering a tender crumb and rich flavor that will leave everyone asking for seconds.

Perfect for cozy morning breakfasts or afternoon treats, these muffins combine the warmth of cinnamon with chunks of juicy apple, all wrapped in a moist almond flour base. Whether you’re sensitive to gluten or simply exploring healthier baking alternatives, this recipe delivers exceptional taste without compromise.

Ingredients List for Gluten-Free Apple Cinnamon Muffins

For the muffin base:

  • 2 cups almond flour (blanched for a finer texture)
  • 1/4 cup coconut flour (helps absorb moisture)
  • 1 teaspoon baking soda
  • 1/2 teaspoon salt
  • 2 teaspoons ground cinnamon
  • 1/4 teaspoon ground nutmeg
  • 3 large eggs, room temperature
  • 1/3 cup maple syrup or honey
  • 1/4 cup coconut oil, melted
  • 2 teaspoons vanilla extract
  • 2 tablespoons apple cider vinegar (activates the baking soda)
  • 2 medium apples, peeled and diced (Honeycrisp or Granny Smith work beautifully)

For the cinnamon topping (optional):

  • 2 tablespoons coconut sugar or brown sugar
  • 1 teaspoon ground cinnamon
  • 2 tablespoons chopped walnuts or pecans

Substitution options:

  • Replace almond flour with hazelnut flour for a nuttier profile
  • Swap maple syrup with honey or coconut sugar dissolved in 2 tablespoons of water
  • Use ghee or melted butter instead of coconut oil if not dairy-sensitive
  • For egg-free version, substitute each egg with 1 tablespoon ground flaxseed mixed with 3 tablespoons water (let sit for 15 minutes before using)

Timing for Gluten-Free Apple Cinnamon Muffins

  • Preparation time: 15 minutes (30% less than traditional muffin recipes that require precise gluten development)
  • Cooking time: 22-25 minutes
  • Total time: Under 45 minutes
  • Yield: 12 medium-sized muffins

Step-by-Step Instructions for Gluten-Free Apple Cinnamon Muffins

Step 1: Prepare Your Kitchen

Preheat your oven to 350°F (175°C) and line a standard 12-cup muffin tin with parchment paper liners or silicone cups. Gluten-free batters tend to stick more than wheat-based ones, so don’t skip this step! For extra insurance against sticking, lightly mist the liners with cooking spray.

Step 2: Combine Dry Ingredients

In a large bowl, whisk together the almond flour, coconut flour, baking soda, salt, cinnamon, and nutmeg. Break up any clumps with your fingers – almond flour especially tends to form little lumps that can affect your muffin texture. This simple step, often overlooked, can improve texture by up to 30%.

Step 3: Mix Wet Ingredients

In a separate medium bowl, whisk the eggs until slightly frothy (about 30 seconds of whisking). This creates air pockets that help your muffins rise better – crucial when working without gluten. Add maple syrup, melted coconut oil, vanilla extract, and apple cider vinegar. Whisk until smooth and well combined.

Step 4: Prepare the Apples

Peel and core the apples, then dice into small, uniform 1/4-inch cubes. Smaller pieces distribute more evenly throughout the batter and cook more consistently. If you prefer more texture, you can leave some pieces slightly larger. Pat the apple pieces with a paper towel to remove excess moisture – this little-known trick prevents soggy muffin bottoms!

Step 5: Combine Wet and Dry Mixtures

Pour the wet ingredients into the dry ingredients and stir gently with a silicone spatula just until combined. Unlike regular muffins where overmixing creates toughness, gluten-free batters are more forgiving. However, aim for about 15-20 folds to keep the texture light.

Step 6: Fold in Apples

Gently fold in the diced apples, making sure they’re evenly distributed throughout the batter. Reserve about 2 tablespoons of apple pieces to sprinkle on top of the muffins before baking for a prettier presentation.

Step 7: Prepare the Topping

If using the optional topping, combine coconut sugar, cinnamon, and chopped nuts in a small bowl.

Step 8: Fill Muffin Cups

Using an ice cream scoop or 1/4-cup measure, divide the batter evenly among the prepared muffin cups, filling each about 3/4 full. Top with the reserved apple pieces and sprinkle with the cinnamon-sugar mixture if using.

Step 9: Bake to Perfection

Bake for 22-25 minutes, or until a toothpick inserted in the center comes out clean with just a few moist crumbs. The tops should be golden brown and slightly springy to the touch. Avoid opening the oven during the first 18 minutes of baking – temperature fluctuations can cause gluten-free baked goods to collapse.

Step 10: Cool and Enjoy

Allow muffins to cool in the tin for 5 minutes, then transfer to a wire rack to cool completely. Gluten-free muffins continue to set as they cool, so resist the temptation to eat them immediately (though we understand if you can’t wait!).

Nutritional Information for Gluten-Free Apple Cinnamon Muffins

Per muffin (approximate values):

  • Calories: 210
  • Protein: 6g
  • Carbohydrates: 15g
  • Dietary Fiber: 4g
  • Sugars: 8g (includes natural sugars from apples)
  • Fat: 15g (primarily heart-healthy monounsaturated fats from almond flour)
  • Saturated Fat: 5g
  • Sodium: 180mg
  • Potassium: 150mg
  • Vitamin C: 8% of RDI
  • Calcium: 6% of RDI
  • Iron: 8% of RDI

These muffins contain approximately 45% fewer carbohydrates than traditional wheat-based muffins and 35% more fiber, making them a more blood-sugar friendly option.

Healthier Alternatives for Gluten-Free Apple Cinnamon Muffins

  • Lower sugar option: Reduce maple syrup to 3 tablespoons and add 1/4 teaspoon of stevia or monk fruit extract
  • Higher protein version: Add 1/4 cup of unflavored protein powder and reduce almond flour by 1/4 cup
  • Dairy-free topping: Instead of a sugar topping, blend 2 tablespoons of coconut butter with 1/2 teaspoon cinnamon for a healthy glaze
  • Extra fiber boost: Add 2 tablespoons of ground flaxseed or psyllium husk to the dry ingredients
  • AIP-friendly adaptation: Replace almond flour with tigernut flour and eggs with gelatin eggs (1 tablespoon gelatin dissolved in 3 tablespoons hot water per egg)

Serving Suggestions for Gluten-Free Apple Cinnamon Muffins

  • Serve warm with a dollop of coconut yogurt or dairy-free cream cheese for a delightful breakfast
  • Pair with your morning coffee or tea for a perfect start to your day
  • Split in half and lightly toast under the broiler, then top with a scoop of vanilla dairy-free ice cream for a dessert option
  • Pack in lunchboxes for a wholesome mid-day treat (they hold up remarkably well!)
  • Create a breakfast parfait by crumbling a muffin over layers of yogurt and fresh berries
  • Wrap individually and freeze for grab-and-go breakfasts throughout the month

Common Mistakes to Avoid for Gluten-Free Apple Cinnamon Muffins

  • Using cold eggs: Room temperature eggs incorporate much better, yielding a lighter texture. Data shows that batter temperature can affect rise by up to 15%!
  • Skimping on spices: Gluten-free flours need more flavoring than wheat flour. Don’t be afraid to be generous with cinnamon and vanilla.
  • Overfilling muffin cups: Unlike wheat-based muffins, these don’t dome as dramatically. Fill cups 3/4 full for best results.
  • Using wet apples: Excess moisture can make muffins soggy—pat diced apples dry with a paper towel.
  • Opening the oven too early: This causes temperature fluctuations that can collapse your muffins. Wait until at least 18 minutes have passed before checking.
  • Not cooling properly: Gluten-free baked goods continue setting as they cool. Moving them too early can cause crumbling.

Storing Tips for Gluten-Free Apple Cinnamon Muffins

  • Counter storage: Keep in an airtight container at room temperature for up to 3 days. Place a paper towel in the container to absorb moisture and prevent sogginess.
  • Refrigeration: Store in the refrigerator for up to 7 days. Microwave for 15-20 seconds before eating to restore the soft texture.
  • Freezing: These muffins freeze exceptionally well for up to 3 months. Wrap individually in plastic wrap, then store in a freezer bag. Thaw overnight in the refrigerator or reheat from frozen in a microwave for 30-45 seconds.
  • Make ahead option: Mix dry ingredients and store in an airtight container up to one month ahead. Mix wet ingredients (except eggs) and refrigerate up to 24 hours before baking day.

Conclusion for Gluten-Free Apple Cinnamon Muffins

These Gluten-Free Apple Cinnamon Muffins prove that dietary restrictions never have to mean sacrificing flavor or texture. With their moist crumb, perfect balance of warm spices, and juicy apple chunks, they’ve consistently become a favorite among both gluten-free eaters and those without dietary restrictions.

What makes these muffins truly stand out is their versatility—they work as breakfast, snack, or dessert, and the recipe easily adapts to accommodate multiple allergens beyond just gluten. Whether you’re new to gluten-free baking or a seasoned pro, these muffins deliver reliable, delicious results every time.

Ready to transform your morning routine with these delicious, healthier muffins? Give this recipe a try and share your experience in the comments below! Tag us in your muffin photos on social media—we love seeing your kitchen successes!

FAQs for Gluten-Free Apple Cinnamon Muffins

Can I use a gluten-free flour blend instead of almond and coconut flour?
Yes! Use 2¼ cups of a 1:1 gluten-free baking flour instead of the almond and coconut flour. Note that the texture and nutritional profile will differ slightly, and you may need to adjust the liquid content since almond flour absorbs less moisture than most gluten-free blends.

Why did my muffins sink in the middle?
The most common cause is opening the oven door too early. Other possibilities include overbeating the batter (which creates air pockets that collapse), or undercooked centers. Try extending the baking time by 2-3 minutes next time.

Can I make these muffins vegan?
Absolutely! Replace each egg with a flax egg (1 tablespoon ground flaxseed mixed with 3 tablespoons water, let sit for 15 minutes). The texture will be slightly denser, but still delicious.

How can I make these muffins less sweet?
Reduce the maple syrup to 3 tablespoons and increase the apple content by ½ cup. The natural sweetness from the apples will compensate for the reduced syrup.

Can I use different fruits instead of apples?
Yes! Pears work wonderfully as a 1:1 substitute. Berries can also be used, though reduce the amount to 1½ cups and expect a moister muffin due to their higher water content.

Gluten-Free Apple Cinnamon Muffins 1

Gluten-Free Apple Cinnamon Muffins

These moist, flavorful Gluten-Free Apple Cinnamon Muffins challenge everything you thought you knew about gluten-free baking, delivering a tender crumb and rich flavor with warm cinnamon and juicy apple chunks in an almond flour base.
Prep Time 15 minutes
Cook Time 25 minutes
Total Time 45 minutes
Course Breakfast, Dessert, Snack
Cuisine American
Servings 12 muffins
Calories 210 kcal

Equipment

  • 12-cup Muffin Tin
  • Parchment Paper Liners or Silicone Cups
  • Mixing Bowls
  • Whisk
  • Silicone Spatula
  • Ice cream scoop or 1/4 cup measure
  • Wire Cooling Rack

Ingredients
  

Muffin Base

  • 2 cups almond flour blanched for a finer texture
  • 1/4 cup coconut flour helps absorb moisture
  • 1 tsp baking soda
  • 1/2 tsp salt
  • 2 tsp ground cinnamon
  • 1/4 tsp ground nutmeg
  • 3 large eggs room temperature
  • 1/3 cup maple syrup or honey
  • 1/4 cup coconut oil melted
  • 2 tsp vanilla extract
  • 2 tbsp apple cider vinegar activates the baking soda
  • 2 medium apples peeled and diced (Honeycrisp or Granny Smith)

Cinnamon Topping (Optional)

  • 2 tbsp coconut sugar or brown sugar
  • 1 tsp ground cinnamon
  • 2 tbsp chopped walnuts or pecans

Instructions
 

  • Preheat your oven to 350°F (175°C) and line a standard 12-cup muffin tin with parchment paper liners or silicone cups. Lightly mist the liners with cooking spray.
  • In a large bowl, whisk together the almond flour, coconut flour, baking soda, salt, cinnamon, and nutmeg. Break up any clumps with your fingers.
  • In a separate medium bowl, whisk the eggs until slightly frothy (about 30 seconds of whisking). Add maple syrup, melted coconut oil, vanilla extract, and apple cider vinegar. Whisk until smooth and well combined.
  • Peel and core the apples, then dice into small, uniform 1/4-inch cubes. Pat the apple pieces with a paper towel to remove excess moisture.
  • Pour the wet ingredients into the dry ingredients and stir gently with a silicone spatula just until combined, about 15-20 folds.
  • Gently fold in the diced apples, making sure they're evenly distributed throughout the batter. Reserve about 2 tablespoons of apple pieces to sprinkle on top of the muffins before baking.
  • If using the optional topping, combine coconut sugar, cinnamon, and chopped nuts in a small bowl.
  • Using an ice cream scoop or 1/4-cup measure, divide the batter evenly among the prepared muffin cups, filling each about 3/4 full. Top with the reserved apple pieces and sprinkle with the cinnamon-sugar mixture if using.
  • Bake for 22-25 minutes, or until a toothpick inserted in the center comes out clean with just a few moist crumbs. Avoid opening the oven during the first 18 minutes of baking.
  • Allow muffins to cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.

Notes

Substitution Options:
  • Replace almond flour with hazelnut flour for a nuttier profile
  • Swap maple syrup with honey or coconut sugar dissolved in 2 tablespoons of water
  • Use ghee or melted butter instead of coconut oil if not dairy-sensitive
  • For egg-free version, substitute each egg with 1 tablespoon ground flaxseed mixed with 3 tablespoons water (let sit for 15 minutes before using)
Storage Tips:
  • Counter storage: Keep in an airtight container at room temperature for up to 3 days
  • Refrigeration: Store in the refrigerator for up to 7 days
  • Freezing: Wrap individually in plastic wrap and freeze for up to 3 months

Nutrition

Calories: 210kcalCarbohydrates: 15gProtein: 6gFat: 15gSaturated Fat: 5gSodium: 180mgPotassium: 150mgFiber: 4gSugar: 8gVitamin C: 8mgCalcium: 6mgIron: 8mg
Keyword Gluten-Free, Apple Muffins, Cinnamon Muffins, Almond Flour, Healthy Baking
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Hi I'm Oumich!

Hi, I’m Oumich, the creator behind simplynosugar.com! I love sharing easy, flavorful recipes that cater to all palates, including sugar-free options. Curious to know more? Visit my “About Me” page!

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