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Cream Cheese Stuffed Apple Muffins pinterest

Cream Cheese Stuffed Apple Muffins

These moist, flavorful muffins combine the comforting warmth of cinnamon-spiced apples with a velvety cream cheese filling that melts in your mouth. Perfect for fall baking but delicious year-round, they offer the perfect balance of sweetness and tang.
Prep Time 25 minutes
Cook Time 22 minutes
Total Time 50 minutes
Course Breakfast, Dessert
Cuisine American
Servings 12 muffins
Calories 320 kcal

Equipment

  • 12-cup Muffin Tin
  • Mixing Bowls
  • Electric Mixer
  • Piping Bag or Zip-top Bag
  • Wire Cooling Rack

Ingredients
  

Muffin Batter

  • 2 cups all-purpose flour substitute with 1:1 gluten-free flour blend if needed
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/2 tsp salt
  • 2 tsp ground cinnamon
  • 1/2 tsp ground nutmeg
  • 1/3 cup butter melted (or coconut oil for dairy-free option)
  • 2/3 cup brown sugar or coconut sugar for a less refined alternative
  • 2 large eggs room temperature
  • 1 cup unsweetened applesauce
  • 2 tsp vanilla extract
  • 2 medium apples peeled and diced (about 1½ cups) - Honeycrisp or Granny Smith work beautifully

Cream Cheese Filling

  • 8 oz cream cheese softened (substitute with dairy-free cream cheese if preferred)
  • 1/4 cup granulated sugar
  • 1 egg yolk
  • 1 tsp vanilla extract
  • 1 tbsp lemon zest optional but adds a delightful brightness

Streusel Topping

  • 1/3 cup all-purpose flour
  • 1/3 cup brown sugar
  • 1/2 tsp ground cinnamon
  • 3 tbsp cold butter cubed (or solid coconut oil)
  • 1/4 cup chopped walnuts or pecans optional

Instructions
 

  • Preheat your oven to 350°F (175°C) and line a 12-cup muffin tin with paper liners or generously grease each cup.
  • In a medium bowl, beat the softened cream cheese until smooth and fluffy – about 2 minutes with an electric mixer. Add the sugar, egg yolk, vanilla extract, and lemon zest if using. Beat for another minute until well combined and silky. Transfer to a piping bag or zip-top bag with a corner snipped off. Place in the refrigerator while preparing the remaining components.
  • In a small bowl, whisk together flour, brown sugar, and cinnamon for the streusel. Using your fingertips or a pastry cutter, work the cold butter into the mixture until it resembles coarse crumbs. If using nuts, fold them in now. Set aside in the refrigerator.
  • In a large bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, and nutmeg until evenly distributed.
  • In a separate bowl, whisk together the melted butter and brown sugar until well combined. Add the eggs one at a time, whisking well after each addition. Stir in the applesauce and vanilla extract until smooth.
  • Add the dry ingredients to the wet ingredients and gently fold together until just combined. Your batter should still have a few small streaks of flour. Gently fold in the diced apples, distributing them evenly throughout the batter.
  • Fill each muffin cup about ⅓ full with the apple batter. Remove your cream cheese filling from the refrigerator and pipe or spoon about 1 tablespoon into the center of each muffin. Top with the remaining batter, covering the cream cheese completely.
  • Sprinkle the streusel topping over each muffin, gently pressing it into the batter slightly. Bake for 22-25 minutes, or until a toothpick inserted into the muffin part (not the cream cheese) comes out clean.
  • Allow the muffins to cool in the tin for 5-10 minutes before transferring to a wire rack to cool completely.

Notes

Due to the cream cheese filling, these muffins should be stored in the refrigerator after the first day. They can be kept for up to 5 days refrigerated or frozen for up to 3 months.
For a healthier version, replace half the all-purpose flour with whole wheat flour, use Greek yogurt cream cheese, and reduce the sugar to ½ cup.
Avoid overmixing the batter as this will result in tough muffins.

Nutrition

Calories: 320kcalCarbohydrates: 42gProtein: 5gFat: 16gSaturated Fat: 9gSodium: 280mgFiber: 2gSugar: 25g
Keyword Apple Muffins, Cream Cheese Muffins, Fall Baking, Stuffed Muffins
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